Clustering MATLAB

Toolbox

• Smoothed Data Histogram Toolbox for Matlab / Cluster Visualization with Self-Organizing Maps
  http://www.ofai.at/~elias.pampalk/sdh/ 
   

• Data description toolbox
  http://ida.first.fhg.de/~davidt/dd_tools.html  
   

• GP-OLS MATLAB Toolbox
  http://www.fmt.vein.hu/softcomp/gp/
   

• MATLABArsenal - A MATLAB Package for Classification Algorithms
  Rong Yan
  http://finalfantasyxi.inf.cs.cmu.edu/MATLABArsenal/MATLABArsenal.htm
   

Routines

• Quantum clustering of microarray expression data in a truncated SVD space
  David Horn and Inon Axel
  Bioinformatics 19, 1110-1115 (2003)
  http://neuron.tau.ac.il/%7Ehorn/publications/bioinfo.ps.gz 
  code: http://neuron.tau.ac.il/%7Ehorn/QC.htm  
   
• Fuzzy C-Means
  http://www-igbmc.u-strasbg.fr/projets/fcm/ 
   
  Fuzzy C-means method for clustering microarray data.
  Dembele D, Kastner P., Bioinformatics. 2003 May 22;19(8):973-80
  http://bioinformatics.oxfordjournals.org/cgi/reprint/19/8/973.pdf  
   
• Classification Demo for MATLAB
  http://www.mathworks.com/products/demos/statistics/classdemo.html 
   
• Miscellaneous MATLAB Software, Tricks and Demonstrations
  Gavin Cawley (School of Computing Sciences, University of East Anglia)
  http://theoval.cmp.uea.ac.uk/~gcc/matlab/ 
   

• ClusterPack Matlab Toolbox
  Alexander Strehl
  http://www.lans.ece.utexas.edu/~strehl/soft.html 
   

• Cluster Routines
  Frank Dellaert
  http://www.cc.gatech.edu/~dellaert/html/software.html  
   

• Cluster Matlab Cluster Analysis includes cophenet - Cophenetic coefficient, cluster - Construct clusters from LINKAGE output, clusterdata - Construct clusters from data, dendrogram - Generate dendrogram plot, inconsistent - Inconsistent values of a cluster tree, kmeans - k-means clustering, linkage - Hierarchical cluster information, pdist - Pairwise distance between observations, silhouette - Silhouette plot of clustered data, squareform - Square matrix formatted distance.
   

• EM Algorithm for Clustering (EMfc.m)
  By Panagiotis Braimakis
  http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=3713&objectType=file
   

• Clustergram - Comnined dendrogram and heat plot
  http://www.mathworks.com/matlabcentral/fileexchange/loadFile.do?objectId=2442&objectType=file 
   

• Clustering with Matlab
  http://www.cs.ucl.ac.uk/staff/D.Corney/ClusteringMatlab.html 
   

• Fuzzy Modeling and Identification Toolbox
  Robert Babuska
  http://fuzzy.iau.dtu.dk/download/nf/ 
    

• Hierarchical Clustering Explorer for Multidimensional Clustering and Outlier Detection
  http://www.cs.umd.edu/hcil/multi-cluster/ 
   

• Model-Based Clustering Toolbox for MatLab (includes advanced visualization tools for hierarchical clustering)
  Angel Martinez and Wendy Martinez (Naval Surface Warfare Center, Dahlgren Division)
  http://www.stat.washington.edu/fraley/mclust/soft.shtml
  Toolbox: ftp://ftp.u.washington.edu/public/mclust/MBCToolbox.zip 
   

Interesting conferences on the topic